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Publications

Published research from EMSL user projects is available on this Publications page. Publications are searchable by citation and abstract title.

Toward Revealing Microcystin Distribution in Mouse Liver Tissue Using MALDI-MS Imaging

Daria Kucheriavaia, Dušan Veličković, Nicholas Peraino, Apurva Lad, David J. Kennedy, Steven T. Haller, Judy A. Westrick, Dragan Isailovic. 2021. "Toward Revealing Microcystin Distribution in Mouse Liver Tissue Using MALDI-MS Imaging." Toxins 13 (10):709. 10.3390/toxins13100709
Related Projects: 51432

Near Infrared Emitting Semiconductor Polymer Dots for Bioimaging and Sensing

Connor Riahin, Kushani Mendis, Brandon Busick, Marcin Ptaszek, Mengran Yang, Gary Stacey, Amar Parvate, James E. Evans, Jeremiah Traeger, Dehong Hu, Galya Orr, Zeev Rosenzweig. 2022. "Near Infrared Emitting Semiconductor Polymer Dots for Bioimaging and Sensing." Sensors 22 (19):7218. 10.3390/s22197218
Related Projects: 51203, 51203, 51203, 51203

Grain‐Boundary‐Rich Noble Metal Nanoparticle Assemblies: Synthesis, Characterization, and Reactivity

Xin Geng, Shuwei Li, Jaeyoung Heo, Yi Peng, Wenhui Hu, Yanchao Liu, Jier Huang, Yang Ren, Dongsheng Li, Liang Zhang, Long Luo. 2022. "Grain‐Boundary‐Rich Noble Metal Nanoparticle Assemblies: Synthesis, Characterization, and Reactivity." Advanced Functional Materials 32 (34):2204169. https://onlinelibrary.wiley.com/doi/full/10.1002/adfm.202204169
Related Projects: 60223

Bulk and Spatially Resolved Extracellular Metabolome of Free-Living Nitrogen Fixation

Darian N. Smercina, Young-Mo Kim, Mary S. Lipton, Dusan Velickovic, Kirsten S. Hofmockel. 2022. "Bulk and Spatially Resolved Extracellular Metabolome of Free-Living Nitrogen Fixation." Applied and Environmental Microbiology 88 (12) 10.1128/aem.00505-22
Related Projects: 51811

Two-Dimensional van der Waals Nanoplatelets with Robust Ferromagnetism

Michael C. De Siena, Sidney E. Creutz, Annie Regan, Paul Malinowski, Qianni Jiang, Kyle T. Kluherz, Guomin Zhu, Zhong Lin, James J. De Yoreo, Xiaodong Xu, Jiun-Haw Chu, Daniel R. Gamelin. 2020. "Two-Dimensional van der Waals Nanoplatelets with Robust Ferromagnetism." Nano Letters 20 (3):2100-2106. 10.1021/acs.nanolett.0c00102
Related Projects: 51291, 50632

Hanging drop sample preparation improves sensitivity of spatial proteomics

Yumi Kwon, Paul D. Piehowski, Rui Zhao, Ryan L. Sontag, Ronald J. Moore, Kristin E. Burnum-Johnson, Richard D. Smith, Wei-Jun Qian, Ryan T. Kelly, Ying Zhu. 2022. "Hanging drop sample preparation improves sensitivity of spatial proteomics." Lab on a Chip 22 (15):2869-2877. https://doi.org/10.1039/d2lc00384h
Related Projects: 49531, 60218, 60218, 60218, 60201

The Impact of Freeze‐Thaw History on Soil Carbon Response to Experimental Freeze‐Thaw Cycles

Erin C. Rooney, Vanessa L. Bailey, Kaizad F. Patel, Angela R. Possinger, Adrian C. Gallo, Maya Bergmann, Michael SanClements, Rebecca A. Lybrand. 2022. "The Impact of Freeze‐Thaw History on Soil Carbon Response to Experimental Freeze‐Thaw Cycles." Journal of Geophysical Research: Biogeosciences 127 (5) https://doi.org/10.1029/2022JG006889
Related Projects: 50267, 50267

Determinants of Selectivity for the Formation of Monocyclic and Bicyclic Products in Monoterpene Synthases

Hoshin Kim, Narayanan Srividya, Iris Lange, Eden W. Huchala, Bojana Ginovska, B. Markus Lange, Simone Raugei. 2022. "Determinants of Selectivity for the Formation of Monocyclic and Bicyclic Products in Monoterpene Synthases." ACS Catalysis 12 (12):7453-7469. https://pubs.acs.org/doi/full/10.1021/acscatal.2c01836
Related Projects: 51181, 51732

Structural Characterization of Cytochrome c′β‐Met from an Ammonia-Oxidizing Bacterium

Jan Abendroth, Garry W. Buchko, Hyung J. Kim, Fong Ning Liew, Joline N. Nguyen. 2022. "Structural Characterization of Cytochrome c′β‐Met from an Ammonia-Oxidizing Bacterium." Biochemistry 61 (7):563-574. https://doi.org/10.1021/acs.biochem.1c00640
Related Projects: 51214, 51713, 50586, 60239

10.3389/feart.2020.00338

John R. Bargar, Callum Bobb, Kristin Boye, Christopher A. Francis, Kate Maher, Bradley B. Tolar. 2020. "Stability of Floodplain Subsurface Microbial Communities Through Seasonal Hydrological and Geochemical Cycles." Frontiers in Earth Science 8 doi.org/10.3389/feart.2020.00338
Related Projects: 50365

10.1021/acs.cgd.1c00169

Trent R. Graham, Sebastien N. Kerisit, Sebastian T. Mergelsberg, Micah P. Prange, Shawn L. Riechers. 2021. "Effect of Cd on the Nucleation and Transformation of Amorphous Calcium Carbonate." Crystal Growth & Design 21 (6):3384-3393. https://doi.org/10.1021/acs.cgd.1c00169
Related Projects: 51915, 51915

10.1021/acs.cgd.0c01655

Sebastien N. Kerisit, Sebastian T. Mergelsberg, Micah P. Prange. 2021. "Ab Initio Molecular Dynamics Simulations of Amorphous Calcium Carbonate: Interpretation of Pair Distribution Function and X-ray Absorption Spectroscopy Data." Crystal Growth & Design 21 (4):2212-2221. https://dx.doi.org/10.1021/acs.cgd.0c01655
Related Projects: 51915

Cell‐Type‐Specific Proteomics Analysis of a Small Number of Plant Cells by Integrating Laser Capture Microdissection with a Nanodroplet Sample Processing Platform

Amir H. Ahkami, Vimal K. Balasubramanian, Eduardo Blumwald, William B. Chrisler, Ryan T. Kelly, Yiran Liang, Ljiljana Pasa‐Tolic, Samuel O. Purvine, C. Neal Stewart, Ying Zhu. 2021. "Cell‐Type‐Specific Proteomics Analysis of a Small Number of Plant Cells by Integrating Laser Capture Microdissection with a Nanodroplet Sample Processing Platform." Current Protocols 1 (5) 10.1002/cpz1.153
Related Projects: 50407, 51688, 51688, 50407, 51688, 51688, 50407

High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chip

Joshua N. Adkins, Victor Aguilera-Vazquez, Joshua Cantlon-Bruce, Geremy C. Clair, Song Feng, Dehong Hu, Tao Liu, Lye Meng Markillie, Hardeep S. Mehta, Ronald J. Moore, Ljiljana Pasa-Tolic, Richard D. Smith, Ryan L. Sontag, Chia-Feng Tsai, Sarah M. Williams, Jongmin Woo, Ying Zhu. 2021. "High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chip." Nature Communications 12 (1) 10.1038/s41467-021-26514-2
Related Projects: 51688, 51688, 51688, 51583, 51583

Three-dimensional feature matching improves coverage for single-cell proteomics based on ion mobility filtering

Charles Ansong, William B. Chrisler, Geremy C. Clair, Song Feng, Ryan T. Kelly, Ronald J. Moore, Ljiljana Paša-Tolić, Richard D. Smith, Chia-Feng Tsai, Sarah M. Williams, Jongmin Woo, Ying Zhu. 2022. "Three-dimensional feature matching improves coverage for single-cell proteomics based on ion mobility filtering." Cell Systems 10.1016/j.cels.2022.02.003
Related Projects: 51688, 51688, 51688, 60231

Understanding Competitive Phosphate and Silicate Adsorption on Goethite by Connecting Batch Experiments with Density Functional Theory Calculations

Ping Chen, Tianhu Chen, Haibo Liu, Kevin M. Rosso, Duo Song, Qiaoqin Xie, Liang Xu, Xin Zhang, Yuefei Zhou. 2022. "Understanding Competitive Phosphate and Silicate Adsorption on Goethite by Connecting Batch Experiments with Density Functional Theory Calculations." Environmental Science & Technology 56 (2):823-834. 10.1021/acs.est.1c03629
Related Projects: 51382, 50833, 51382, 51382

In situ imaging of amorphous intermediates during brucite carbonation in supercritical CO2

Anne M. Chaka, James J. De Yoreo, Alan S. Lea, John S. Loring, Sebastian T. Mergelsberg, Elias Nakouzi, Odeta Qafoku, Kevin M. Rosso, Herbert T. Schaef, Xin Zhang. 2021. "In situ imaging of amorphous intermediates during brucite carbonation in supercritical CO2." Nature Materials 21 (3):345-351. 10.1038/s41563-021-01154-5
Related Projects: 50833, 51382, 51382, 51382, 50833, 50833

Particle-based hematite crystallization is invariant to initial particle morphology

James J. De Yoreo, Yang He, Qingyun Lin, Lili Liu, Kevin M. Rosso, Duo Song, Maria L. Sushko, Yining Wang, Sichuang Xue, Xin Zhang, Jianbin Zhou, Junwu Zhu, Meirong Zong. 2022. "Particle-based hematite crystallization is invariant to initial particle morphology." Proceedings of the National Academy of Sciences 119 (11) 10.1073/pnas.2112679119
Related Projects: 51382, 51382, 51382, 51382, 51382, 51382

Reduction of structural Fe(III) in nontronite by humic substances in the absence and presence of <i>Shewanella putrefaciens</i> and accompanying secondary mineralization

Yu Chen, Rosalie K. Chu, Hailiang Dong, Richard E. Edelmann, Samar Elagamy, Dafu Hu, Jinglong Hu, Liuqin Huang, Fubo Luan, Andre Sommer, Nikola Tolic, Nancy Washton, Qiang Zeng, Di Zhan, Zihua Zhu, Hongyan Zuo. 2021. "Reduction of structural Fe(III) in nontronite by humic substances in the absence and presence of Shewanella putrefaciens and accompanying secondary mineralization." American Mineralogist 106 (12):1957-1970. https://doi.org/10.2138/am-2021-7828
Related Projects: 49851

Lignin-enhanced reduction of structural Fe(III) in nontronite: Dual roles of lignin as electron shuttle and donor

Ethan Coffin, Hailiang Dong, Jinglong Hu, Ravi K. Kukkadapu, Gary A. Lorigan, Robert M. McCarrick, Shuisong Ni, Yizhi Sheng, Andre J. Sommer, Qiang Zeng, Simin Zhao. 2021. "Lignin-enhanced reduction of structural Fe(III) in nontronite: Dual roles of lignin as electron shuttle and donor." Geochimica et Cosmochimica Acta 307:1-21. https://doi.org/10.1016/j.gca.2021.05.037
Related Projects: 51570