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Probing complex microbiomes using mass spectrometry and sequencing capabilities to understand how microbiomes are influenced by their environment


EMSL Project ID
49229

Abstract

This proposal will utilize next generation sequencing and mass spectrometry (MS) capabilities to address key knowledge gaps in our functional understanding of how complex microbiomes influence and are influenced by their surrounding environment (i.e. soil environment, gut environment, etc).

Project Details

Start Date
2016-02-08
End Date
2016-09-30
Status
Closed

Team

Principal Investigator

Stephen Callister
Institution
Pacific Northwest National Laboratory

Team Members

Eric Bottos
Institution
Pacific Northwest National Laboratory

Taniya Roy Chowdhury
Institution
Woodwell Climate Research Center

Richard White
Institution
Washington State University

Jared Shaw
Institution
Environmental Molecular Sciences Laboratory

Carrie Nicora
Institution
Pacific Northwest National Laboratory

Ljiljana Pasa-Tolic
Institution
Environmental Molecular Sciences Laboratory

Related Publications

Callister S.J., L. McCue, A.A. Boaro, B.L. Lamarche, R.A. White, J.M. Brown, and B.K. Ahring. 2018. "Identification of metabolite and protein explanatory variables governing microbiome establishment and re-establishment within a cellulose-degrading anaerobic bioreactor." PLoS One 13, no. 10:Article number e0204831. PNNL-SA-133574. doi:10.1371/journal.pone.0204831